NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211539_10086497

Scaffold Ga0211539_10086497


Overview

Basic Information
Taxon OID3300020437 Open in IMG/M
Scaffold IDGa0211539_10086497 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1251
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5Long. (o)70.0Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033460Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0211539_100864972F033460GAGMIRYTMLETQISEGHHTSCHFCFDRFEGSLDKGLDLSKYELSITDPRTHFHVHYLNRDGDYMEKEVLDAYDINVDFPVIFFGRELPYQDGFRCAYHLNTLKKLKSPFIRDVVKIIKLFKGNFIDIILASDFTQNGEIRNKDINIEIIPHIKNHNEIGEILKKNFELPKLDYYKESFNDYKEEDFAWHIKIKLFRYIKEPLIKFYKTYPNNPYLHFKYYDK

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