NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10000117

Scaffold Ga0211576_10000117


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10000117 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67369
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (29.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002876Metagenome / Metatranscriptome524Y
F040584Metagenome161Y
F089561Metagenome / Metatranscriptome109Y
F098264Metagenome / Metatranscriptome104Y
F106117Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000011728F089561N/AMAYLITTYLEDIPHAIIPNPSAKRFELIPIVKDSQVSKAFCSPNKTGAMSILNWINDNDTELASKNLSVQPEAKFFC
Ga0211576_1000011732F106117N/AMLSFESSPEEEFWKVKMERAIEDCNSVYELKQIATMLVKLAATRQCVIKGLVRDSLDRMESELRVSSE
Ga0211576_1000011737F098264GAGMNSKNYEEHIYYILDHFTKGGTPLPALIGNKLEWQVTTLVAGLLANEHVSTGLEAEQIVDAAINYVNIIQQRLGHYQNAKINSLEGLLDKN
Ga0211576_1000011765F002876N/AMACKKSELVSAINSFGAARSTGDQNLVAFSGRLIGELLEDLNFDPEDEPTSEAETSDNQSEQSS
Ga0211576_1000011784F040584N/AMNKGGSYVVGKPKKTKQGSGKHSRPNHGRKKLRGQGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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