NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10000604

Scaffold Ga0211576_10000604


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10000604 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29616
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (4.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011351Metagenome292Y
F017932Metagenome238Y
F077934Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100006042F077934N/AMESKWGWYNILYGLSNSILDIEKIVKKPILEVLTYLAFTQDHNNTNNNNYDKLQ
Ga0211576_1000060437F017932N/AMLKDPNIKPTFFNTRTEQLHWNHTDINNLLFIIFFNSGATLSFILRDLKKNENIKNYIYSKLNKSFSNIAEIDISRISLYEYNLLKQLKVPHVNKIC
Ga0211576_100006047F011351GGAGMELKNYIEDSAKFITKSIDHLQLVDYKDKNLDFEYGLEEYHTSFRRLFKQIIRIILR
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