NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10000652

Scaffold Ga0211576_10000652


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10000652 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28629
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (37.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023615Metagenome / Metatranscriptome209Y
F042280Metagenome / Metatranscriptome158Y
F072343Metagenome / Metatranscriptome121Y
F082523Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000065223F023615N/AMNRFDLEEAMGEMLATQNDIETMIYAIGDSPTKHTEDQLLNMLIGMKQLNETRYQKMWSIFEALIKEKKIL
Ga0211576_1000065247F042280GGAMKIKNKWDEEFEVNVGDYVGFKCDIEQIGRVKEIQRRGALIVENKDGFDGDYIGGDTEALVGFDEVWEEA
Ga0211576_1000065253F072343N/AMHIRREIDNILDDMLEIIAKNKKSNKETSEDKAMIEHLERTINLKTDDGKRAKGIWTDSPEFLVKPLV
Ga0211576_1000065261F082523N/AMSGEAHTAFFRRTSETKESNTQLCKIFERIILASSVKKHMKFYPDHVGQVHLYEKGGEDVPDWMKKTLRFDGTFELMISTYESWYEDADLYEGEREDSFLSLAKKFADLYSLNYYERGVYELEDELEKKGLTLSEK
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