Scaffold Ga0211576_10001975

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211576_10001975

Scaffold Ga0211576_10001975

Overview

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10001975 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15114
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (29.41%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066781	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100019752	F066781	GGA	MKNNKKCIVTTEQGDIQGTIINEYEEIGGEDDGAIFAVIDLDNGQLITVRMTEEEYGDFKID

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