NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10004132

Scaffold Ga0211576_10004132


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10004132 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9997
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052433Metagenome142Y
F059124Metagenome134Y
F072426Metagenome121Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000413211F052433N/AMDLDIYYPYNIPFFTDKKFIDIKFVNNDDHYINIYFVDGDKLGKLAGIVFSHTERKYRFPEKSIVAIISENNPHKYQCFIKLMDGMKYIYP
Ga0211576_100041326F072426N/AMNTKPKLVDPNWFQKPKPKPIKKIIPTNADNSLIINIIGLCILVIGGLCIYQRYLDREKTELESQNKIIELNEYVKRNIK
Ga0211576_100041327F059124N/AMNFDSNLILAIMIYLGSCYALYNYKHSKMFDESGNFKTFGLSKDETVFPYWLVTTLIGLSSYYFLIIRRDNLL
Ga0211576_100041329F073751N/AMVQNNIKWNLTPEKCFEIIHLTLIDILSESKDGIRNINDLIIMLNSRTKIYKLHNHRKYNSFSKYLKLEYKGFLNFIEDYNFYDVIKTDKDISIKLYKNLVNLDDIKYSGKRLTKDSEWIFIDNFDEELL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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