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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020438 Open in IMG/M |
| Scaffold ID | Ga0211576_10004381 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9691 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_133 | |||||||
| Coordinates | Lat. (o) | 35.4118 | Long. (o) | -127.7122 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049214 | Metagenome / Metatranscriptome | 147 | N |
| F075433 | Metagenome / Metatranscriptome | 119 | N |
| F083393 | Metagenome / Metatranscriptome | 113 | Y |
| F086698 | Metagenome | 110 | N |
| F106168 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211576_1000438115 | F075433 | AGGAG | MSDEMVMAKVNAFAQELKELGVEDFIFAAGSSAGLLAIQYDGDPRGVCFLAMSALMNAMFDSLDGGAGEMDVGRREDYSE |
| Ga0211576_1000438117 | F086698 | GGA | VAQGNDSDKSQVHGTTGSGNILPISAITQESATSLLFTRQGREDFAATSHPIMTVPSHTIGKQLPLLCGLQDVVAQTGFLITADSSNTITVMIGGKTVSATDGIPLVAGQSIMIDIVRLSKIYAIAATDPSGETCNLFWLDM |
| Ga0211576_100043813 | F049214 | AGAAG | MANLNQGYRSGNAFGRLANVSYENYTGEDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSVATNFDGTHGDALEQYGLASISAYYDLGTTTVAETDKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKYMVKETGDWHSLNAFPPYDTSNAGLPVGFRGDGTSEHLSQVGSVSAKLYLKQPSGVSKHTLDEASDGESARATASETTLEGISGFMDGEMSPLANPNWSFGMIVEHGEASLPAFRVVNDSDEYILDGRVRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM |
| Ga0211576_100043815 | F083393 | GGAG | MKLGKKVMKFADDYPLAVLALGTVGIMYAFENVGQINGLGQATFKTSGSDMDTFFHKTGHTGTAAPGTGRWDTVMPSPSGPQVRYDAEYHTQPIMMDPELEKTLAERGKRPVVQSPSIRHGYEPTIFAGMRQTL |
| Ga0211576_100043817 | F106168 | GAGG | MKLQRKIKTFYKRNTMLSIGLVGAAAYMYLQRQGMMTSLAPVPVKAATSSAPVARYAYDAYPPIRNEPYTNASHFFGPADGDPVFYGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |