NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10004961

Scaffold Ga0211576_10004961


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10004961 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9019
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007006Metagenome / Metatranscriptome360Y
F050674Metagenome145N
F098061Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000496112F007006AGGAMEVALKAELRKEISRIVDLMIQGEAIRESINELKKDIKSEYAIPVATITKIATIVRKENMEEEQEKWEEIKEYVEACL
Ga0211576_1000496116F050674AGAAGGMDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHNEYDSAVRRINAYWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW
Ga0211576_100049614F098061N/AMIYQIHLKIRLIIMTTRRIRKDLRIFFEDTELTVKEKSFVLGCLKAQQKHPQLTSRQWQIVCEIKEKYKNV
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