NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10083671

Scaffold Ga0211576_10083671


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10083671 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1776
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027054Metagenome / Metatranscriptome196N
F032856Metagenome / Metatranscriptome179N
F034391Metagenome / Metatranscriptome175N
F049006Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100836711F032856AGGMDEAKYRYWSSVYTDYLIDDISDELVNDYEGGANVADEFIVEEEYVRQLIEYWIDNYTMGNHKCKEIIDNLSYDIFEDDNEFGVRPDGWKQAGVWAMDHAIHNDDNIQAIYKMTNEKLQELW
Ga0211576_100836712F034391N/AMTKYSQQYDNKLLEGILDHMANELKSEFGFSTLDEEDTLDVISLFVDNPDKYETAYLHSIETEDTEVVSSREKSNVEILQNLSNYTRYDG
Ga0211576_100836713F027054N/AMAKQKKETSRHWTVELNIGQLKNMAPLKHSKRIGYYHGTHNLNQVRRTVQKRFDGGSGECVKSMFQFQGEYNDKPETSFYIAFSFYGGIETFKDDSGLEGEYMTFADRKILEDKLTILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFYTFGYHKLSSFDKLHSGTTTHVTNTETVG
Ga0211576_100836715F049006N/AMTKIEFIDVCTRHGVDQWIVMDDLLLNGKQHPHDLTVNDLNEFMWSTY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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