NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10124211

Scaffold Ga0211576_10124211


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10124211 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1411
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_101242112F005813GGAGGMKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPNKKAMSWFRWAHDCMCRGQYDDAKEMLRKGLIDDRATTSSD
Ga0211576_101242113F006217AGGAMIELLLAVIEEQNPIHKYCMDKHDHWTGRAACVQELRHAQRKMEVEELREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC
Ga0211576_101242114F029123AGGAGMSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYLNVFKDLTVEIRRREHESQ
Ga0211576_101242115F027536AGGAGGMRVSKVVPIDRVLNECRRRADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF
Ga0211576_101242116F015102N/AMQVESEDGENPNTPFDDVTHWVGNLPRKDTDSDERTNKRNTRRKTKSNFLRKKLGLEEKQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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