NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10265763

Scaffold Ga0211576_10265763


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10265763 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_102657632F085562GAGMDDFTKKSVEKFDKGTVRAAEKLIDSSPELKKIRSIKDGLKPSEITTGVNDAQYKAGYDNIKWSKDKPKAKFKIRVNGKLINPDEEE
Ga0211576_102657633F046983AGGAGMKIPDSWKAESTHKTLGVNTMSLIGLSLLWGHMLELISLWFLPLTILSILAGFGNEVRKRAD
Ga0211576_102657634F035273GAGGMNQTFKVWDSQRKDMTAYTPKQLYKIVVEYPVTNRELEFIGMDRGSCIMQAEVAKEQDDIMLMRSEEAITVLQKEKI
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