NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10452371

Scaffold Ga0211576_10452371


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10452371 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019151Metagenome231Y
F053336Metagenome141Y
F095345Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_104523711F019151N/ATQLINERKVMIVANERAKDGLELFNNDGVQAFEMKNETLKMCADEDGKLWNSVRGLDLFNADGNLVFSLSWSETGVCGTLHDEELTLEITEEF
Ga0211576_104523712F053336GGAGGMTEYFEYLTDLRDGGSMNMMWAPTMLQANFDLSVKESREVFSKWCESLKGN
Ga0211576_104523713F095345AGGAMSDLRIIKEKGFYDQHGNKKFALLEEGQTVKIESHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWE
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