NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10002196

Scaffold Ga0211558_10002196


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10002196 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10552
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (25.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045198Metagenome / Metatranscriptome153Y
F045797Metagenome / Metatranscriptome152Y
F067212Metagenome126Y
F068236Metagenome / Metatranscriptome125Y
F091012Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_1000219617F045198N/AMKLEQEHIEAIAMYMADGLEDHLDIVFWDSIATVLDEFDIDYEDIGEISDEDAEAIVTETRWLFSPKQD
Ga0211558_1000219620F091012N/AMDNLWKRLKPAVKSKILAEKDQYPYLVEDVKTQLQNHKFWTDLPIGTCRQVVNFSHNSVFDVPLMEFMYGDLFIKKA
Ga0211558_100021965F067212N/AMQLHCKLCGKDVTMETEFETRPPFRIINNHMCESKRAKLQAARVKALESGYVL
Ga0211558_100021968F045797AGGAMKLIRTVKEDSCIYILEQFADTVISTKWRPYKVGDLPNRFGCLDDGTDKGGLYEWFNYKGYTYVRDER
Ga0211558_100021969F068236AGGAMSETKDRKFTHDQVVEVAGEYLKCKETGKWVSESDVENYETEMLNIEIQQYYEREQDKYY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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