Basic Information | |
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Taxon OID | 3300020439 Open in IMG/M |
Scaffold ID | Ga0211558_10004401 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7470 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_141 | |||||||
Coordinates | Lat. (o) | 9.846 | Long. (o) | 80.0607 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025477 | Metagenome | 201 | Y |
F028516 | Metagenome | 191 | Y |
F100998 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211558_1000440113 | F028516 | GGA | MNLYQKLKPEIKHRLHRNSDKYAVSVNGIIDRLKSARYYNELTIGDIKQIRAFGDVTSTDILWPDTMFNSKI |
Ga0211558_1000440118 | F025477 | N/A | MSNYKAYQSIKLGKNTTEKDLYNLFGDSVSVYDENGKEIKDYFKIKYRNGWNNE |
Ga0211558_100044016 | F100998 | N/A | MTIDNKIKKLQESFELRAEIADMMWEVDRLKEIEQAYVDDEEYEKAGIVLARQKRLNRLIKNREKKLKQYDDTL |
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