NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10004401

Scaffold Ga0211558_10004401


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10004401 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7470
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025477Metagenome201Y
F028516Metagenome191Y
F100998Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_1000440113F028516GGAMNLYQKLKPEIKHRLHRNSDKYAVSVNGIIDRLKSARYYNELTIGDIKQIRAFGDVTSTDILWPDTMFNSKI
Ga0211558_1000440118F025477N/AMSNYKAYQSIKLGKNTTEKDLYNLFGDSVSVYDENGKEIKDYFKIKYRNGWNNE
Ga0211558_100044016F100998N/AMTIDNKIKKLQESFELRAEIADMMWEVDRLKEIEQAYVDDEEYEKAGIVLARQKRLNRLIKNREKKLKQYDDTL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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