NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10007389

Scaffold Ga0211558_10007389


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10007389 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5780
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022392Metagenome / Metatranscriptome214N
F052203Metagenome / Metatranscriptome143Y
F071138Metagenome / Metatranscriptome122N
F103098Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_100073891F052203AGGAMKNLQTKPARIVRVILNTPNRDRHQWAKIVEGRTVLHTGQPRYIKRVAKKKFNLDLTI
Ga0211558_100073893F071138GAGGMFKVIVSDVECFGREYFTTRSVAFGKSPKQAWAKLRRRGEHTVSGGHPEGYGGVPVLQMRRLEKDGKMLWEIWD
Ga0211558_100073894F103098GGAGMLNAKNVDRVEDCGNGFGWSIIHFDDEFYGNCYEFAVLRDGALCYDSGVTSDVVRGDWTLMDKLKCMVEDIHPDRLAS
Ga0211558_100073896F022392GAGGMKRYDIRIIEPWSGREVTHRDVPQSQLKDIDGETWFTGYNEPIEVITASLIDESRHAAMASYFAKWGTANE
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