NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10047725

Scaffold Ga0211558_10047725


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10047725 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073643Metagenome / Metatranscriptome120Y
F090233Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211558_100477254F090233N/AMKVRVHGKNLPKKFRLGVYGMAELTMRDLLDNRRVVNNLEIDIHFRHHADNGEAMIHENEFRSRPRMFRVIIDPYKTRIDDYGREMGDEEHANEMFKVLGHELVHVKQYVVGDLSMRSKGMYWKGELTKVDNMMKYFKSPWEIEAYGLERYLWMNFIDFWTNNIEKNIT
Ga0211558_100477256F073643N/AMSDRHETVEEFLARGGRIERSEKIIGAKSLNMFSKFDANYRAGSGKTRMGKNGSGKARMSESYWTV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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