Scaffold Ga0211558_10068311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211558_10068311

Scaffold Ga0211558_10068311

Overview

Basic Information
Taxon OID	3300020439 Open in IMG/M
Scaffold ID	Ga0211558_10068311 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1757
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_141
Coordinates	Lat. (^o)	9.846	Long. (^o)	80.0607	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100683113	F021207	N/A	MSKRFKQVNIQHFAILVQDIDISKYTQKEYVEIVEEIYMSIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELINQGKVKWDKNAI
Ga0211558_100683114	F105326	AGG	MGQERNLTPTQHWELHQGLWYMLGCDMELKQKNKTTVIYVDNKSKRQYTYSALGFIKEKSYANKKY
Ga0211558_100683115	F013187	N/A	MPTKNIKKKPKRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG

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