NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10100665

Scaffold Ga0211558_10100665


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10100665 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021206Metagenome220Y
F047360Metagenome150Y
F058518Metagenome135Y
F089518Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211558_101006651F021206N/AMTVTLNQLLEMENVLATRKIPSDIREVTNWKYFSESKQKWITLGEQPLHYVLRILTKKDFKIFMKGE
Ga0211558_101006652F047360GGAGMRFECEIDMSNHAFAHDPHYELSKIIKTISHDVDDFVCISRTKILRDTNGNKIGTWKIIG
Ga0211558_101006654F089518AGTAGGMEYVIHISKKGGECFAYHSTKDKSELDRLVSKYLRMKGITIEVKKRFLS
Ga0211558_101006655F058518AGGMRYKDITIEADDLECDETDTIYKAIKNHILDVGIATPKTLTGFNWRLDVRMRMDNYET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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