NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10103862

Scaffold Ga0211558_10103862


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10103862 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F039398Metagenome / Metatranscriptome164N
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0211558_101038621F006971GGAMIYQGIEYKKHQKVKFVIPTDNRIIDPQTKSIRWKYGSIEFFSTDKISAWVLEKGTKE
Ga0211558_101038622F039398GAGGMEYAADEVNIGYMTCLMFINNEKTLVDKLNNITELYPIDHQGGVSFELVLKSLPTYVEITMNHNGNFNIYTKTTKGEAEFKDEIVETLINFLHLFYVNMVDDENKLLMNAIDKTTYRKIAKRMHYRENFGNDLSGD
Ga0211558_101038623F058532N/AMMVGIIGIVANIVGVDMPLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSLDKLSNFYISKSKIDLLREYVDKYINVEAGCVFMNCVPNKFATINIKHIKDSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKDYNIRGFNGICCR
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Institute for Fundamental Biomedical Research
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