NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211558_10143304

Scaffold Ga0211558_10143304


Overview

Basic Information
Taxon OID3300020439 Open in IMG/M
Scaffold IDGa0211558_10143304 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_141
CoordinatesLat. (o)9.846Long. (o)80.0607Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045690Metagenome152Y
F103061Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211558_101433042F045690AGGAGMVKIITDQIGKKGFIVDGTFITNPYYREDLGVEVDPIEYYGLTDDELIHFEHLKPLEEEPQPSYEELVKDLKGMKFFIVRWCGDTDSPSSHKVDDPIKFFDEYHYGDDVVKDLKEMAVGEKYNVDEMMQDIEILRYE
Ga0211558_101433044F103061N/ADQINKFNKIQKATKYMDDFAIFKIIDDKNISIKDYNEDDIITIERSEFNCNGKTIKAFDVSMGWTWSEEEINPKKGEK
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Institute for Fundamental Biomedical Research
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