NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10001058

Scaffold Ga0211518_10001058


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10001058 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22419
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (64.44%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F002586Metagenome546N
F003365Metagenome / Metatranscriptome491Y
F005537Metagenome / Metatranscriptome397Y
F008307Metagenome / Metatranscriptome335Y
F043149Metagenome / Metatranscriptome157N
F058445Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_1000105819F058445AGAAGMFNESTKEGKNMSYVYDDFGNLKDNCLIVTPTSKPRNIRGLRSDANWQIEAVSYDKKNNLNFNVNCVFWTKKEALSFLKTGVHNCSVTNQPLYKIKQ
Ga0211518_1000105825F002586N/AMKITLDSNDVELAYTTAQRRFIGNVRMNKGFSYGYNKNLKNQLYDGFLGAMGEIVYAKATNSYFNGSYTDNNEFYSESDFQDNIEIRTQDKKSYNFLIIRPGEKQGKYFLIIKENDRDYNFTIKGWFLYKDDLPPEKLSNFGYQDRPAAYKIEINELTPMEEDVRQDKF
Ga0211518_1000105827F003365GAGMLKQIGKEWKKKEEGGTFTADHLSPSQLNMNIDQWHYNYNVLTAAERKKLPANLKMIFGGLVGQGLQDLITEKLTIQELMKGKK
Ga0211518_1000105830F002495GGAGGMSNNGSGKQKDWILFPYDANNEKAIKIDFSGNVILDNGAKGTILGVKGQSKDGNTKFLKIFAQVGVVFKGDDKFTGEMNYAEAGGHKGLIGWLNDSGNILSGYKNEPRPKQAKAQSKEIP
Ga0211518_1000105832F005537AGGAMSDNVKFINELERLLNQKQNDYGDFDHTSYVMVGILEKYLSVHNNVEVKVPLKLFGLFMIFLKCWRVMQSKEYKKDTFDDINGYTELLRRLTLNEQNKG
Ga0211518_1000105834F008307GGAMVKVIKSSDVELAANFEEVFDGATVQEATEKAYNQKMPSESAKVNITDTRFIKANIKVVGGENDESKK
Ga0211518_1000105835F043149GGAGMSLRNSNIRLYTKLDKAHKKIFGAKDKGRQCVHTLKAFKEYNQLYRRIVEAENKDARFLY
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