NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10002712

Scaffold Ga0211518_10002712


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10002712 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13591
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071407Metagenome / Metatranscriptome122N
F072291Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211518_1000271216F071407AGGAGMAIELKKVGDIQTLALGFNYEASVDLTTDLGSTAGSATAVDIQVGGAAMAGLVADAAVVVDEFVTAEVTDGGSAITDATIALGDNGDADGFVDEVDVFSDSGNLGKIFRANGVLLNAATSSGHVVSAVDLTYNFTGNAPDDAAKGKIRILFKYYPTAGEAFSN
Ga0211518_1000271222F072291AGGMSKVDRTKIFYGRNLGTGEIEDENLTLDYKWNQQNRDRLIMWETFKRYVKHESKVPMTNIELCDKIGSSRTHLASMIQLIKDRLNAER
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