Basic Information | |
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Taxon OID | 3300020440 Open in IMG/M |
Scaffold ID | Ga0211518_10022649 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3945 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_025 | |||||||
Coordinates | Lat. (o) | 39.3599 | Long. (o) | 19.4084 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004488 | Metagenome / Metatranscriptome | 436 | Y |
F018008 | Metagenome / Metatranscriptome | 237 | Y |
F028002 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211518_100226492 | F004488 | GGAGG | MFTRLRGWFDAWKKNLFDAYDPPKPTVYKLGKKKFVKVKRIRTGSESKGPYLK |
Ga0211518_100226494 | F028002 | AGGAGG | MKKVIDEIKKHKKAMIGVAVIVVVFAWILLSGDTTPVEAQ |
Ga0211518_100226495 | F018008 | AGG | MEFLNSKKFIIIMLIVLVWAGLSSCSPTEYPDKQPPHETTEELNDKITKEMDAMDREQADKELTGPTDFESIADALGCMFAPDDCPLKKQKEEQQLDR |
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