NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10022649

Scaffold Ga0211518_10022649


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10022649 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3945
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004488Metagenome / Metatranscriptome436Y
F018008Metagenome / Metatranscriptome237Y
F028002Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100226492F004488GGAGGMFTRLRGWFDAWKKNLFDAYDPPKPTVYKLGKKKFVKVKRIRTGSESKGPYLK
Ga0211518_100226494F028002AGGAGGMKKVIDEIKKHKKAMIGVAVIVVVFAWILLSGDTTPVEAQ
Ga0211518_100226495F018008AGGMEFLNSKKFIIIMLIVLVWAGLSSCSPTEYPDKQPPHETTEELNDKITKEMDAMDREQADKELTGPTDFESIADALGCMFAPDDCPLKKQKEEQQLDR
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Institute for Fundamental Biomedical Research
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