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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020440 Open in IMG/M |
| Scaffold ID | Ga0211518_10042563 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2657 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_025 | |||||||
| Coordinates | Lat. (o) | 39.3599 | Long. (o) | 19.4084 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F000896 | Metagenome / Metatranscriptome | 845 | Y |
| F007531 | Metagenome / Metatranscriptome | 349 | Y |
| F069051 | Metagenome | 124 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211518_100425633 | F000896 | AGGAG | MTNKINMVINLSILALLIYLSVTVKEIQDKVFSDPSIMQPAMGYDQTVEMKYNIQTLLNNILTDAINGQENQ |
| Ga0211518_100425635 | F000302 | GGAGG | MVAIMSEDTKYRIAELERQKIELEDRLETLGYSANLVRMHEIEEQIFEIEDTIQKLVK |
| Ga0211518_100425636 | F069051 | AGGAG | MDELDNILTNMNLEQDWYCAECEHGPMMDDDPNCTRCGAKHSYYLDQNAKLLNIVYEAGTFGNFLRYFLERFSNKTPYIPRLPFMDTGTNHTLKNKDFSRLIQRYHPSFINDNEGNINLPVCLIVPSRPKHFLYLKQAQLFRAANGKASPDDLWKKTIVEISTFLADYVKEIKKLYDIKDMSHFTCIPKFIVRDWYKLEFLQDVEETYNYQLFEQLKEHPFWEAQKVFWMDLETFFDWDNFVENITELNEVFGLALDFNRQAEMKEIFDRGLSLDPIRQECNLAEAVLENRSDARLDNLDVATEGYIYAQIEKANPDIQMPVINRFFRDMDEIRQFLAHFPNWYRRPNPNLG |
| Ga0211518_100425637 | F007531 | AGGAG | MLKTIENRILNFANELAIKRAEMVHGTLYLTLENDRDCDDVHAMIRTFYRTKIQPDGGVNMYAVGDEFAFDFVPEDREAPVFSDEDYSGREGMMPDDIDKGVWSEFAEEEILNNMPDEVDTEMQLEIEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |