NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10059602

Scaffold Ga0211518_10059602


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10059602 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2146
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F006222Metagenome / Metatranscriptome378Y
F018479Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100596021F006222AGGVPRVATTINISNPKRYGYDVRIDDILLRSAVGPGREMQIQSSDVQEGQINVKQNPEDFTSNLGRIYSRNNFTGGQGLDTAH
Ga0211518_100596022F018479AGGAGMSTTIGDLVDRTFREYLEPMDDIVSYTTLTAAVDSSVTSIAYNGDLLSVEEEDALDAGAIIEIGQELMICTDLNAVANTITVTRGARGTTATSHSIGDLIKIAPPFPRKVVFDAVKDQINNLFPTLFAVETQSVQSSNGYTLLGTYDSPGTNNYLVSVLKAISQFTDFSAGSDQTGVVFNSVSVQMIQLPNPFTYVDDTATERTITYTSGPNYVNALQFYNIDQGHTCYVTFKKKFIEPTAETDTLATIGLEDEYEPIIMAGVAAQMMSGRDIPTATADYITDQLAVSNFPVGSANSIRNSLLQYQQLLITQARKYLRAKYPEAVEINGVNAGVQ
Ga0211518_100596023F003693AGGMISKLALIDVSEDASNSLGVKTDGMLLCGIQFPATMTGSAVTFDFALDNSTWVDVKETDGTDTSYTVSAGDVLRVDPSGWAFASNGYIRITSDGTEAADRSIILHFRHS
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