NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10074547

Scaffold Ga0211518_10074547


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10074547 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1857
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026851Metagenome196Y
F081221Metagenome114N
F087026Metagenome110Y
F101070Metagenome102Y
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100745472F026851AGGAMTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCEHNMTIIATELEVHFGISA
Ga0211518_100745473F105104AGGAGMLHHIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIQEEA
Ga0211518_100745474F081221AGGAMDDILHALYNILILATGFAAVICASLTAVALINLVSSSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT
Ga0211518_100745475F087026AGGAGGMERGEWKAGDLVRVESTQKTGWGDECHNHLVLVLRMYKRKHTQHYPLTAELEAGTKEKDVVYEVLRDDGKYVKLGLKDYSYPNLRLTNRLVQRSCAEEET
Ga0211518_100745476F101070AGGAGGVGINKIRVDPLEMEAGDLIVTDGRMSLEVGDVLLVVRRLQGHGKRHPFVDGRRVGNQWRLLSRLGVIDMWVDPHASWVVQVVKGQKKTAT
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