Basic Information | |
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Taxon OID | 3300020440 Open in IMG/M |
Scaffold ID | Ga0211518_10074547 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1857 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_025 | |||||||
Coordinates | Lat. (o) | 39.3599 | Long. (o) | 19.4084 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026851 | Metagenome | 196 | Y |
F081221 | Metagenome | 114 | N |
F087026 | Metagenome | 110 | Y |
F101070 | Metagenome | 102 | Y |
F105104 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211518_100745472 | F026851 | AGGA | MTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCEHNMTIIATELEVHFGISA |
Ga0211518_100745473 | F105104 | AGGAG | MLHHIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIQEEA |
Ga0211518_100745474 | F081221 | AGGA | MDDILHALYNILILATGFAAVICASLTAVALINLVSSSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT |
Ga0211518_100745475 | F087026 | AGGAGG | MERGEWKAGDLVRVESTQKTGWGDECHNHLVLVLRMYKRKHTQHYPLTAELEAGTKEKDVVYEVLRDDGKYVKLGLKDYSYPNLRLTNRLVQRSCAEEET |
Ga0211518_100745476 | F101070 | AGGAGG | VGINKIRVDPLEMEAGDLIVTDGRMSLEVGDVLLVVRRLQGHGKRHPFVDGRRVGNQWRLLSRLGVIDMWVDPHASWVVQVVKGQKKTAT |
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