NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211518_10220957

Scaffold Ga0211518_10220957


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10220957 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010910Metagenome / Metatranscriptome297Y
F032992Metagenome178Y
F093724Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_102209571F010910N/AYTIFGMMVGFEGYDNGKVYFGVYTPNCEYGYVITPEEIYLDTILEKN
Ga0211518_102209573F093724GGGGGMNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK
Ga0211518_102209574F032992GGAMNNAMDPNFRYYDCSNIVDENTGEEQDNLSIMVAVPKIDLSTAENRQENIAAISGIVEEQYRRGVQSFTYEEYTGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.