NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211695_10000397

Scaffold Ga0211695_10000397


Overview

Basic Information
Taxon OID3300020441 Open in IMG/M
Scaffold IDGa0211695_10000397 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12489
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070206Metagenome123N
F074982Metagenome119N
F084331Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211695_1000039710F084331GAGGMANFAYADLDITTTTLLDAVNDSKFFQIQALSFTVNPSNVTVNIKNVSSTEFNIVSSTRPGFLTGRRPTTGQLYPRGVYNK
Ga0211695_100003975F074982GGAMSVIKRTGYLNSSNCDAMVAALPLMENAVGKEYRPADDKSKISVYQLLRYYSYPQSLKTVWKANIPSELSSSYLVSTFLKIPANNGILHPTTPSDPARYDLNQPIRAVGCFLSIALTDGQHLILNGTKYNVNKGDALLFDGTYTYETEYISTDALWNVNMVPTWKMSTYGA
Ga0211695_100003976F070206AGGAGMYNSDQIDELLAKENVEQPQTIIFNKITGALVAKMIGSHMDLVNTTYCKGKLVSYNPDTHEYVGDYDTGSVQSKSTSPRIIEEHSLDSTAGVHIRKKYDYHHQLNHIIDMMALLLDASSLTDEQKANFKSMKEYIDEVRDLNNKYKDSYSNDTNWTYKSKTQVASEDDLKTAGGMAEEVKNDNFIPSDYRPGQPS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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