Basic Information | |
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Taxon OID | 3300020441 Open in IMG/M |
Scaffold ID | Ga0211695_10000397 Open in IMG/M |
Source Dataset Name | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12489 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_078 | |||||||
Coordinates | Lat. (o) | -30.1885 | Long. (o) | -43.2831 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F070206 | Metagenome | 123 | N |
F074982 | Metagenome | 119 | N |
F084331 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211695_1000039710 | F084331 | GAGG | MANFAYADLDITTTTLLDAVNDSKFFQIQALSFTVNPSNVTVNIKNVSSTEFNIVSSTRPGFLTGRRPTTGQLYPRGVYNK |
Ga0211695_100003975 | F074982 | GGA | MSVIKRTGYLNSSNCDAMVAALPLMENAVGKEYRPADDKSKISVYQLLRYYSYPQSLKTVWKANIPSELSSSYLVSTFLKIPANNGILHPTTPSDPARYDLNQPIRAVGCFLSIALTDGQHLILNGTKYNVNKGDALLFDGTYTYETEYISTDALWNVNMVPTWKMSTYGA |
Ga0211695_100003976 | F070206 | AGGAG | MYNSDQIDELLAKENVEQPQTIIFNKITGALVAKMIGSHMDLVNTTYCKGKLVSYNPDTHEYVGDYDTGSVQSKSTSPRIIEEHSLDSTAGVHIRKKYDYHHQLNHIIDMMALLLDASSLTDEQKANFKSMKEYIDEVRDLNNKYKDSYSNDTNWTYKSKTQVASEDDLKTAGGMAEEVKNDNFIPSDYRPGQPS |
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