NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211695_10015662

Scaffold Ga0211695_10015662


Overview

Basic Information
Taxon OID3300020441 Open in IMG/M
Scaffold IDGa0211695_10015662 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2371
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012353Metagenome / Metatranscriptome281N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211695_100156623F012353N/AMRWLGRWVFVYEIDNIPDMKNLMLYTTGEWKVDPNKDITFPLVRWLFKLFPILDGSEIEINQVDLGDEFAYGFCQEDDGEFLIHVHNHMDLKEYVKTLIHEITHVRQTLDGITDSNIREDEAYYLEDQLSKAFWDNNISGTSDVES
Ga0211695_100156624F034958AGGAMKSEIDQMIDNLEFCIETIGLNDEQTGEVLAATNELGVNVEYFANEFMETSSVQVHENDYLNIAMFNAMFWEF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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