NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211695_10026365

Scaffold Ga0211695_10026365


Overview

Basic Information
Taxon OID3300020441 Open in IMG/M
Scaffold IDGa0211695_10026365 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1830
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020712Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0211695_100263651F020712GGAGGMKKIMMAIVILLATLTNSFAGNSVYIQQDNQNVNGSIYIKQDGTGNKFGISTSAPFIINGANLTVIVKQIGDNNIATDANHDTFYGSNMTFDYIATGDSNILRLDLDDTGADGHYYDIDITGNSNIVELDSNTSDDIQDTHIDLDIKGNSNDFWAYVRGDSHFLYVLMSGDSN

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