Scaffold Ga0211559_10000073

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211559_10000073

Scaffold Ga0211559_10000073

Overview

Basic Information
Taxon OID	3300020442 Open in IMG/M
Scaffold ID	Ga0211559_10000073 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	54147
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (39.06%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_140
Coordinates	Lat. (^o)	7.416	Long. (^o)	79.3102	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053981	Metagenome	140	Y
F091854	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_100000732	F091854	N/A	MILIAESISPLERGIADMAFVVKLLGESVQVNVGSGSSVPSSANGGVGAEYVMVQHSHSSDRLVEVRTGAGVTYGSVHMAGKDPIIIHKERTDLIYSSASDVYATSVVYQG
Ga0211559_1000007338	F053981	N/A	MKLQHTFGFDCEEIDSLISDNKLDSFLKKLVALGKKQDPDFYDPLKFMGDGFEWFVEYFLKFFNGDHTLTYTANYEPNFDYDRGIDGRGLSTIDGKPNVIQVKFKANPNTQLTNADNISNIAADATMNEGLQYNGKNVIIVTSCKGVHPKHAMANVHCIDREKMARRVDNNVIFWNDLRNIVKEQYA

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