NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10000855

Scaffold Ga0211559_10000855


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10000855 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18773
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (91.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F036474Metagenome170Y
F059922Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000085516F036474GGAGMEKQWMSRDKVDEVLEETLAYVVRVGDATSQLINVAILFGDNANESVSGRSHRLKDKSKAWAWLGASINFVFDDDHCERAYNNDVTRAAKTLNESKPKKKTTKK
Ga0211559_1000085525F059922GGAGMGWRRSEIEVYHCVDLSDYDDEIMEYVEPDNISDAMELMDRWGYSDGDIIEHMLEEPDAFLAKVANVLTVETALEMVKDVYEYGHAIQVRNLEVKNNQIADLKQRVDDLLALNHTVIKEVSDDTQNV
Ga0211559_100008555F000200GAGMIKVFDFKCTNGHVFEDFVDGNTTTSRCGCGANATKIVSATQHILDGSSGDFPGRHMKWVREHEQARQSNRES
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