NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211559_10001213

Scaffold Ga0211559_10001213


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10001213 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15525
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F048242Metagenome148Y
F060928Metagenome / Metatranscriptome132N
F078930Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_100012132F078930N/AMNNQVMANDQLKKDLKDILKIKGKVTKERPVKGLIKKEAFIRFIDNYKYANDRALMLKTEHAIDFVNFEEPFVQAIEALLQLHFNKNQKQIIEWWLYEKWNQLDGSVLQLNNTETDEELPSDTPEELWELVQTLK
Ga0211559_100012133F010243N/AMSKTTYILETKTTQSGVRGERIGKVVAESLSEAIHIFAGIKQLRPDQLIELFSVYEQPSDGK
Ga0211559_100012134F048242N/AMRKRRIIPTLPADFFEDATNKVKYQKMLYSSILDGIEQTLANGKPSFVMARVSDGRNVKDVSILKESFKTNLETVLDFYEQVEEYEKCSRTVNLIKQIK
Ga0211559_100012135F060928N/AMKKTELHDMVLETLNEYITEAELKTGDNEFTIKVDVNRNPTKKGIKIQLIPKGETVLVDPDEKIDVNEKVQSAMNAKLRKYDLQVSIDPDIKQATDNPNVLGYYIPLNQFKNLITKALKG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.