NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10005177

Scaffold Ga0211559_10005177


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10005177 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7089
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024570Metagenome205Y
F031530Metagenome182Y
F033836Metagenome176Y
F053336Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000517712F053336GGAMNEYFEYLTDLRDSGTMNMMWAPTMLQADFDLDKTEAREIFSKWCESLKGN
Ga0211559_100051775F031530AGGAMDFVVYKSEADNTGRLVELVHNKHCEVYEVIVDGIPVFNCTDYSVAEHEFNMECV
Ga0211559_100051776F033836N/AMTISEYELFGVSSHANEKNTQYTVGKGIPAVGKQEEENNREERFVDMVKETEVKAAAFCVVAFVLGLCCALMLGCKTSAKVEGGAEIIELKPLEMQELTYPVYDRNSIC
Ga0211559_100051779F024570AGGAMAYVAYEIKRSKETATGTRYLVRCNRLGKWAITTWVGSTGSSMGTVECQGKRDYVLKKWDKIVGSRQKFH
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