Scaffold Ga0211559_10012480

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211559_10012480

Scaffold Ga0211559_10012480

Overview

Basic Information
Taxon OID	3300020442 Open in IMG/M
Scaffold ID	Ga0211559_10012480 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4375
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_140
Coordinates	Lat. (^o)	7.416	Long. (^o)	79.3102	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071137	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1001248010	F071137	GGAG	MGADFTLATFPYFDMTDDRRERFTELLNNLSPEQTDEFQEWYGLDDEDSFHPADLLEDIETACSTCSRETSILTTYNDKGEKYELNVTGGMSWGDSPTEAYDAFNRAAFFESVYDLAIDFSVEY

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.