NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10023575

Scaffold Ga0211559_10023575


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10023575 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3098
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021207Metagenome220Y
F029779Metagenome187Y
F070656Metagenome123N
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1002357511F070656GGAGMSKEILEAVREASISIACCLDELSDVSKKDLEHIQDQITKIENYLTPFYLEELEEMNK
Ga0211559_100235753F021207N/AMSKRFKQVNVQHFATLVQDIDVSKYTQKEYVEIVEELYMGIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELIKQGKIIWDKNVI
Ga0211559_100235754F105326AGGMGQERNLTPTQHWELHQGLWYMLGCDMKLKHKDRTKIIYVDNKSKRQYTYSALGFIKEKK
Ga0211559_100235757F029779AGGAGMKYEEKYKELCEALVGIDATERYTHEDILSYVYNLKKMEDKYYDSQKT
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