NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10083379

Scaffold Ga0211559_10083379


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10083379 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F027536Metagenome194Y
F048640Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0211559_100833792F048640AGGAMQPKELHAHARCRYEPTRVEKGLECRLFGKTFRSVAAAARYYELSLSTVYEWHHDHRHREAFPKTKRWDRWRNNNEAV
Ga0211559_100833793F005813GGAGGMRLYKNSNGVWAGTQADARKYCGKDYQTVDVPTDKPNLLGFLNLNQVGGLASSPTLEEVRTGEPNKEAMSWFRWAYDCMMRGQYDDAKEMLKKGLTDDRSTTSDSSHTS
Ga0211559_100833795F027536GGAGGMRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEAKLHEQEQKLYEQDKQEGVLWVPNF
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