Scaffold Ga0211544_10058900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211544_10058900

Scaffold Ga0211544_10058900

Overview

Basic Information
Taxon OID	3300020443 Open in IMG/M
Scaffold ID	Ga0211544_10058900 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1493
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_152
Coordinates	Lat. (^o)	43.7649	Long. (^o)	-16.8935	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044547	Metagenome	154	Y
F045152	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211544_100589001	F044547	N/A	KMDGNIPDRNTKSEINTLLNVVKAINDLNTKVVVTEGQAFDEKTGDITSIFKQIKAQRST
Ga0211544_100589003	F045152	GGA	MTPTLGDPPAAGHEYRDACKSCGSTEGRTWTYGANDGKSKGFSTCRSCGAVTK

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