NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211544_10431016

Scaffold Ga0211544_10431016


Overview

Basic Information
Taxon OID3300020443 Open in IMG/M
Scaffold IDGa0211544_10431016 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7649Long. (o)-16.8935Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018198Metagenome236Y
F018553Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0211544_104310161F018553N/ATSHRMRIAILNDEISLWEKRLKDDPDQIPYIGYIRTTLKNRVKELEQQENINE
Ga0211544_104310162F018198GAGMSEEIKTTSTCRIILDGKEMLYSHQNILLAIHSFLPYLTNDDLDDLSKTIATYKDKRRQKEYLAHLEAKVIPIQSNRHDT

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