NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211578_10128930

Scaffold Ga0211578_10128930


Overview

Basic Information
Taxon OID3300020444 Open in IMG/M
Scaffold IDGa0211578_10128930 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.5319Long. (o)-159.0668Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010876Metagenome / Metatranscriptome298Y
F023623Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0211578_101289302F010876AGGAGMNIDKTAVGFNSSPLYRFLLSEGKFKGVEFYFKNVELDHKHTPGSFDIAFEYEIIGGNYRDHGYPADKEYMNRAITEKNKDQFQVEIGKILKNLLILNDPRVILHKGKGL
Ga0211578_101289303F023623N/AMKIDFTTGKVYYPDRDEELKESLEEMKIKENLGIETNIEKESLFQKTRHHGLPYGRLKYLFYCFLQMMDGLIGMVSFGQTQSILAQKYLLSKWILSEGEEHEHR
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