NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211578_10342521

Scaffold Ga0211578_10342521


Overview

Basic Information
Taxon OID3300020444 Open in IMG/M
Scaffold IDGa0211578_10342521 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.5319Long. (o)-159.0668Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001922Metagenome617Y
F021317Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0211578_103425211F001922N/AMIQKLLVEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVVEYMQYDRMLKEKQEKPNITTGAVFAMIGLGLSLITFPQ
Ga0211578_103425212F021317N/ARILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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