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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020446 Open in IMG/M |
| Scaffold ID | Ga0211574_10000027 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 78429 |
| Total Scaffold Genes | 156 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 72 (46.15%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_137 | |||||||
| Coordinates | Lat. (o) | 14.2017 | Long. (o) | -116.6336 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003751 | Metagenome / Metatranscriptome | 470 | Y |
| F004325 | Metagenome / Metatranscriptome | 443 | Y |
| F037769 | Metagenome | 167 | N |
| F067817 | Metagenome | 125 | N |
| F071303 | Metagenome | 122 | N |
| F072439 | Metagenome | 121 | N |
| F074765 | Metagenome | 119 | Y |
| F087060 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211574_1000002713 | F067817 | N/A | MLRPNTELLREEVNQGQPRYVDVSKGTLTAKTKRAEAINKATLRKKSK |
| Ga0211574_1000002735 | F037769 | GGAG | MPDKDAKKIINHVFSDLIKWTYEDAVFHLTQIFNFTDEESDQLIKEYDILTSTTKEVIMNPPPSFEATAPRDVNDYKSNLWQARKLLLEAKKLISATALTPRDYHNQKDFEEAIVQRMELQVNFVNINKYIDDHLTFAKNYTPPGK |
| Ga0211574_1000002741 | F087060 | N/A | MYTITTKPMTQSQTTSNNTSQKEAISRLSGITKGKPVVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFMNDLKAALDDNEDNPKIRHSENERVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKADLIKQTFTVSFKA |
| Ga0211574_1000002748 | F074765 | GGAGG | MTTKTITKKPKTITVSKLSHRKSRDGWISYNCELRVGRTCYAAVDQEGCGGDARIDWNNTEHYLFIHHWILDTQKDFLRKDEVEWIDTYVQLGHKTLEESYKEKQELIKKYNLWDKLAKKQPKTWHDAREIQQKLGFFDDMVGSWTTTYVENKVGDKYN |
| Ga0211574_1000002763 | F071303 | N/A | MVQFGNLKRNLKTPADKVTFQGKNPANKTTGPNTAGNLQDPWRGTLDNNPLNDDFYQSSYTFGNQAPEVQQRLEGLQFEYGNAFEEGNNEFAQNFLNKYTSALGGSDSAENKGLIEQDRIVRPENLAQLAAQPATGGNAIQDSNVAGKFPSQEVNV |
| Ga0211574_1000002775 | F004325 | N/A | MKKKKASTTQRADQFLQAIGTAGGPIGSPQLVGFGGTDVQSQLASGNRDEYESIRMRQGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNMVAAERNQDFIRSQEQMFLSQYLPAAGLSQLPVGQPPLESNKGKK |
| Ga0211574_1000002778 | F003751 | GGAGG | MATYKSDAGAILQPGNQINALSAFNTEGVHGWPGIDLFEQIGFIKVSNKSGTKASFKSFDITIPSPDRRPDDRVRDDRTSLVVKASTARPAYVYQASLAIAQDIPAGGLPSFPASPVTADLQGTNGEFLLLGPDNSGAPFGVPSTQANGLAAASSLLDIGASGIAQGTGNTSTDGTNDGIVPFWSVVTGGGITAANAANSMMFKVTADTTFKVYNVNGITGTAVNGDGVFISDTDSDEGRAAYILCRINYLRASRAVSWSDVQTNIDFASQLGGTDS |
| Ga0211574_1000002781 | F072439 | N/A | MPHQDKAFIEHPSYKIKPRTSLGYTLGINRDKDIISPKERIKASPFKEKRRTRMAGEKRVDIFSVRPDQAPFTYTKGTNLPKRFTQTLDIPIDREEEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |