NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211574_10005372

Scaffold Ga0211574_10005372


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10005372 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6452
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012180Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0211574_100053727F012180N/AMKTIILATALTVLTFGAVAEELSLEDRVSKLEDKSLGLPNGFFINGEIEGYYDDKTYDSGWDSRGALQFGVETSLPDNELNIDWVGGTTTIDSHYALNTADNNKLVEKQLGFGNDTARIYIGETDAQRMGFAKTPKISAPLIYTETNYRIDHREKTVLTFGGWQYDNEFDFDSHRLSKEKPWGVALAYDNNNNVYYGTATVDLGLAEVSYMHITGPEDTNKDDQQGYAIGGSLHRFGVPMLWGVELWDDKNTGTYTEDDRLDYGVMYNVTEAVYVSAHRTENDDLGYDGNYYGVVYNLVTDYDATKRADKQDGLEVGLYYHDKEQTNIATGAYTDHGSQFLASVRYKF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.