NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211574_10012861

Scaffold Ga0211574_10012861


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10012861 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4028
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062838Metagenome130N
F099140Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211574_100128612F062838GGAMRDTKVIIYCHKQQKDAPLASVRYTKYDDLNRVIDVDQIDYEDKNYFHSEVLQAITCGVDVLIYTHLDGTSLQKKIEKWT
Ga0211574_100128617F099140N/AMTTKKLYKIKTKSILYEVFEVEAESYDKALDSIMPTIYDGTDDYPVDVERVGWWFDGMGKSILDKDDEHKGLFGIPITIEEYDKTPEWQIVKPQGCFPGDFREPTDEEWIADEKQAIADGRIVKESITLKFAHYPE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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