NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211574_10100386

Scaffold Ga0211574_10100386


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10100386 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0211574_101003862F032291N/AVEESRERPLGKEGDTDQVVMAPPLDVGVTVVMAVPLVNVNAFGLYEIEEGAMSLTTMVRSAVVLPPVLLAVTV
Ga0211574_101003863F032291GAGGMAVGVPEMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVMAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV
Ga0211574_101003864F008747N/AVIAVGVPLIAPVELDKERPAGKDGETDQEMTVPPVEVGVTVVIAVPLVSVSELGL
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Institute for Fundamental Biomedical Research
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