NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211574_10347188

Scaffold Ga0211574_10347188


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10347188 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044549Metagenome154Y
F076185Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0211574_103471881F044549N/AMAVQIQSRRSSTANDRPFPVRLGSGELALNNNNVSPGLFFADNTASPSTGLIKVGPVHIGNTAPNTSPAGFTSLSKG
Ga0211574_103471882F076185N/AEGNKNITGDFNLPQDVANFDPSVIAMTLTDSLKRDSKGDLDREGQSLNTTNRMIAMINKLFNKSPTVLDDIKFGIINRPLTEFTQSFESGLLKAGDYINGELVDTAINTSNLDAGSYNPETAQDTVVDAGLYINS
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