NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211691_10002577

Scaffold Ga0211691_10002577


Overview

Basic Information
Taxon OID3300020447 Open in IMG/M
Scaffold IDGa0211691_10002577 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6565
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.3455Long. (o)-43.2924Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003292Metagenome / Metatranscriptome495Y
F040139Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0211691_1000257710F003292N/ALLFLFTVGCDGVKHVLQIEEPTDHTSGDDGGKLKYKIIWGDINQKE
Ga0211691_100025777F040139N/AMHTKEKENSGTCCQVENAKEHAEQLTYEHHAQVGPAPKETK

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