NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211691_10093054

Scaffold Ga0211691_10093054


Overview

Basic Information
Taxon OID3300020447 Open in IMG/M
Scaffold IDGa0211691_10093054 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.3455Long. (o)-43.2924Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062833Metagenome / Metatranscriptome130Y
F066852Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0211691_100930542F066852GAGGMISKEVLEERKKTLVGDIDKLEKTIAEVGEQQKQLQANMFALHGALQQCDQFLELVEKENVKDG
Ga0211691_100930543F062833AGGAGMADEIRYGAGGIPYVGAGGSSAPAAAAPVVEEKPEEPIVTVEVIEDDTPLDEVAVQKKAKGNGK

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