NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10005669

Scaffold Ga0211638_10005669


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10005669 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5324
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083754Metagenome / Metatranscriptome112Y
F096285Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211638_100056695F096285GGAMNWLKTAAIGIWIRAHSDLLFRGLISLVIFLILNSIYSKYEAVLLVTNPEKLFIPLYIYTFIILVLVIWTLLALRWVSGMAVAKKKVAAKESFTNKSDEYKKIADVASYPKLKTKKDSIIES
Ga0211638_100056696F083754GGAMSLKKYIFNSMKKYRFISPMKKRELEEKAAIYRKKWKARMFLQSGSFFNNPNPRCGWGDEATTINMPQSKEDVKIYFRAHEKVTLEYANNHGGLWGKHREGLIQQSKLHEEICELPENVQIYIAGLNNAIRSGVIHPWENIVSKYFYAQHEWDLFLILDMLKKTSDIHGMDDGPWPLYWFQSRELLFEALHRYPDLIKNTVGRSLPLRIWDQKDFVKEIVDVNFELFKSAPRHIKESKEKVLEAAKVDGRIIGFIKTKMRNDPDVAITAVNSHADAKDCLFKKTRDALGLI
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