NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10028568

Scaffold Ga0211638_10028568


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10028568 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2387
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F012583Metagenome / Metatranscriptome279Y
F013094Metagenome / Metatranscriptome274Y
F023620Metagenome / Metatranscriptome209Y
F082798Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211638_1002856811F082798N/AMSELSALKQAQYHLKQLEGHIKDNKWYSHLYSHLAAVEGELQRQVETLEGAKVKILDNSEVEEISETERLYDVLEEQTNGFFPPDASYTRLSRVRA
Ga0211638_100285682F001026AGGAGMKHTIELDDLELTALMTHLAGQSEMMCESRLNCSNPSEMPDREEVLLNLIYARAFTLAWEADKNPKVDFDLIKNQDRIYKYK
Ga0211638_100285683F013094AGGAMISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELRDMNQKISVVINQIDEFREERREEREKLFDVSNDTK
Ga0211638_100285687F012583GGAGGMKKSDQIKIETFDKYVMRGGDQSLQNIEDLCDYGFNLVGLGYEPEVFNDVVIEVIQKLTGDLKS
Ga0211638_100285688F023620AGGAGMKTALLLSEYDLSTVHYLCSYYKDNANLDAQDVDYINELQNKVNSLMEVTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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